PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G090400.1
Common NameB456_009G090400, LOC105768979
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 323aa    MW: 36188.9 Da    PI: 4.6069
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G090400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH291.9e-09138181755
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + Er RR r+++++  Lr+l+P+      +K++Ka+i   Av Y+++Lq
  Gorai.009G090400.1 138 ISERLRRGRMKEKLYALRSLVPNI-----TKMDKASIIGDAVLYVQDLQ 181
                         67*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.583131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-15132196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.27E-10133183No hitNo description
Gene3DG3DSA:4.10.280.102.1E-15133198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-11137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-7138181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDASRNYPLQ FPNQFELYDF IDDPNFDQFI DLIRGESEDA GVGYDCDLLN GSFVEDKQIS  60
STPGDTFCLD ASTTIVPDSN YVFDPFPSTF YGEMMKDGED DNDEENSSGT TTATATATTP  120
TTPTATKKPR VDRSRTLISE RLRRGRMKEK LYALRSLVPN ITKMDKASII GDAVLYVQDL  180
QMQAKKLKAE IAGLEATLAG SERYQQSIEN PVKIRVARSN SHPVCKKIMQ LNMFQVEERE  240
FYIRLICNKG EGVAISLYKA LESLTNFKVL NSNLATLSDR FVLTFTLNMR DCEQSMNLPN  300
LKLWVCGALL NQGFEFTTPL SS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3950063e-68GQ395006.1 Gossypium hirsutum cultivar Delta Opal clone MONCS2029 SSR marker DPL0452 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444750.10.0PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
SwissprotQ0V7X43e-99FIT_ARATH; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLA0A0D2TM330.0A0A0D2TM33_G
STRINGVIT_06s0061g00720.t011e-118(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41872857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.15e-92FER-like regulator of iron uptake
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]